BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= BA0AB022G03LP1|AL427944
(670 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig1170 613 e-175
>3x_Contig1170
Length = 4668
Score = 613 bits (303), Expect = e-175
Identities = 330/353 (93%)
Strand = Plus / Plus
Query: 318 ggtgaaggaagatgcaatgtagaggggaagccgcagcacggccatttccccttctttttt 377
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1 ggtgaaggaagatgcaatgtagaggggaagccgcagcacggccatttccccttctttttt 60
Query: 378 ttttgttacaccgtcaamgatgtataartattakattcttttacgaattcttksgacaaa 437
||||||||||||||||| ||||||||| ||||| |||||| ||||||||||| ||||||
Sbjct: 61 ttttgttacaccgtcaacgatgtataagtattagattcttgtacgaattcttgcgacaaa 120
Query: 438 kktsttcsattattkagsgagccatacgatagcacggsckcagaggaaktagacgatkat 497
| ||| |||||| || ||||||||||||||||||| | |||||||| |||||||| ||
Sbjct: 121 ggtcttccattattgagcgagccatacgatagcacggccgcagaggaagtagacgatgat 180
Query: 498 kgtgaatkagagccatccaattcagagagaaacatcgaatcgtgaaccaaakattcttca 557
|||||| ||||||||||||||||||||||||| ||||||||||||||||| ||||||||
Sbjct: 181 ggtgaatgagagccatccaattcagagagaaacttcgaatcgtgaaccaaagattcttca 240
Query: 558 aagtagtagatggatgcakaaatkcgtaccactccgatggttagcactatgaaaccgaac 617
|||||||||||||||||| |||| ||||||||||||||||||||||||||||||||||||
Sbjct: 241 aagtagtagatggatgcagaaatgcgtaccactccgatggttagcactatgaaaccgaac 300
Query: 618 acaagccctgtgtataamatctcggctgtatgcggtaccaatgaatcgtgata 670
||||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct: 301 acaagccctgtgtataaaatctcggctgtatgcggtaccaatgaatcgtgata 353
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.40 0.715 1.33
Gapped
Lambda K H
1.40 0.715 1.33
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 13,752
Number of Sequences: 1807
Number of extensions: 13752
Number of successful extensions: 743
Number of sequences better than 1.0e-20: 1
length of query: 670
length of database: 10,358,551
effective HSP length: 16
effective length of query: 654
effective length of database: 10,329,639
effective search space: 6755583906
effective search space used: 6755583906
T: 0
A: 40
X1: 5 (10.1 bits)
X2: 14 (28.3 bits)
S1: 12 (24.8 bits)
S2: 49 (99.7 bits)